Detailed information NTG0214840

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BWZ32_RS15485
• Genome accession: NZ_CP019320
• Coordinates: 3092373..3093242 (+)
• Length: 289 a.a.
• NCBI ID: WP_101957318.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain VV2014DJH
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3087373..3098242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWZ32_RS15465 (BWZ32_15350)	nadC	3087757..3088644 (+)	888	WP_061058907.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BWZ32_RS15470 (BWZ32_15355)	-	3088864..3089316 (+)	453	WP_060530791.1	pilin	-
BWZ32_RS15475 (BWZ32_15360)	pilB	3089321..3091006 (+)	1686	WP_101957316.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BWZ32_RS15480 (BWZ32_15365)	pilC	3091053..3092279 (+)	1227	WP_101957317.1	type II secretion system F family protein	Machinery gene
BWZ32_RS15485 (BWZ32_15370)	pilD	3092373..3093242 (+)	870	WP_101957318.1	prepilin peptidase	Machinery gene
BWZ32_RS15490 (BWZ32_15375)	coaE	3093244..3093852 (+)	609	WP_045596843.1	dephospho-CoA kinase	-
BWZ32_RS15495 (BWZ32_15380)	zapD	3093885..3094625 (+)	741	WP_045596844.1	cell division protein ZapD	-
BWZ32_RS15500 (BWZ32_15385)	yacG	3094688..3094882 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
BWZ32_RS15505 (BWZ32_15390)	rplS	3095165..3095518 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
BWZ32_RS15510 (BWZ32_15395)	trmD	3095560..3096309 (-)	750	WP_101957319.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BWZ32_RS15515 (BWZ32_15400)	rimM	3096337..3096885 (-)	549	WP_011079542.1	ribosome maturation factor RimM	-
BWZ32_RS15520 (BWZ32_15405)	rpsP	3096901..3097149 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32169.23 Da
• Isoelectric Point: 6.8198

>NTDB_id=214840 BWZ32_RS15485 WP_101957318.1 3092373..3093242(+) (pilD) [Vibrio vulnificus strain VV2014DJH]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVLSWLALRGKCHHCQTKISARYPFAEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=214840 BWZ32_RS15485 WP_101957318.1 3092373..3093242(+) (pilD) [Vibrio vulnificus strain VV2014DJH]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTGAGTTGGTTAGCACTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGGTATCC
TTTTGCTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACACTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTAATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.509	100	0.775
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	48	95.156	0.457