Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BWZ32_RS08330 Genome accession   NZ_CP019320
Coordinates   1753822..1755243 (-) Length   473 a.a.
NCBI ID   WP_101956899.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2014DJH     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748822..1760243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ32_RS08300 (BWZ32_08290) - 1749229..1749996 (+) 768 WP_011080632.1 phospholipase A -
  BWZ32_RS08305 (BWZ32_08295) - 1750235..1750639 (+) 405 WP_011080631.1 hypothetical protein -
  BWZ32_RS08310 (BWZ32_08300) - 1750713..1751816 (-) 1104 WP_101956898.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  BWZ32_RS08315 (BWZ32_08305) - 1752019..1752411 (-) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  BWZ32_RS08320 (BWZ32_08310) - 1752724..1753401 (-) 678 WP_011080628.1 LrgB family protein -
  BWZ32_RS08325 (BWZ32_08315) - 1753404..1753775 (-) 372 WP_011080627.1 CidA/LrgA family protein -
  BWZ32_RS08330 (BWZ32_08320) sbcB 1753822..1755243 (-) 1422 WP_101956899.1 exodeoxyribonuclease I Machinery gene
  BWZ32_RS08335 (BWZ32_08325) - 1755317..1756015 (-) 699 WP_045597850.1 oxidoreductase -
  BWZ32_RS08340 (BWZ32_08330) cobT 1756552..1757580 (+) 1029 WP_080608788.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BWZ32_RS08345 (BWZ32_08335) - 1757582..1758349 (+) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  BWZ32_RS08350 (BWZ32_08340) cobU 1758352..1758912 (+) 561 WP_204250561.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  BWZ32_RS08355 (BWZ32_08345) cobC 1758922..1759560 (+) 639 WP_011080621.1 alpha-ribazole phosphatase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54760.02 Da        Isoelectric Point: 5.1722

>NTDB_id=214832 BWZ32_RS08330 WP_101956899.1 1753822..1755243(-) (sbcB) [Vibrio vulnificus strain VV2014DJH]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=214832 BWZ32_RS08330 WP_101956899.1 1753822..1755243(-) (sbcB) [Vibrio vulnificus strain VV2014DJH]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCGAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATTGTGCCAATAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGACTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAACGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCATGCTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.932

99.789

0.808

Multiple sequence alignment