Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM338_RS23465 Genome accession   NZ_CP024855
Coordinates   4585940..4586416 (+) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4580940..4591416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM338_RS23440 (AM338_23415) - 4583423..4583878 (+) 456 WP_000581506.1 IrmA family protein -
  AM338_RS27135 - 4583979..4584187 (+) 209 Protein_4324 DUF905 family protein -
  AM338_RS23450 (AM338_23425) - 4584288..4585109 (+) 822 WP_001234565.1 DUF932 domain-containing protein -
  AM338_RS23460 (AM338_23435) - 4585451..4585924 (+) 474 WP_000855059.1 antirestriction protein -
  AM338_RS23465 (AM338_23440) radC 4585940..4586416 (+) 477 WP_001424026.1 RadC family protein Machinery gene
  AM338_RS23470 (AM338_23445) - 4586485..4586706 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM338_RS23475 (AM338_23450) - 4586725..4587369 (+) 645 WP_000086755.1 hypothetical protein -
  AM338_RS23480 (AM338_23455) - 4587420..4587778 (+) 359 Protein_4330 type IV toxin-antitoxin system YeeU family antitoxin -
  AM338_RS23485 (AM338_23460) - 4587799..4588167 (+) 369 WP_001094398.1 TA system toxin CbtA family protein -
  AM338_RS23490 (AM338_23465) - 4588488..4588826 (-) 339 Protein_4332 LysR substrate-binding domain-containing protein -
  AM338_RS23495 (AM338_23470) paoD 4588877..4589833 (-) 957 WP_000121359.1 molybdenum cofactor insertion chaperone PaoD -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=214829 AM338_RS23465 WP_001424026.1 4585940..4586416(+) (radC) [Escherichia coli strain AR_0011]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214829 AM338_RS23465 WP_001424026.1 4585940..4586416(+) (radC) [Escherichia coli strain AR_0011]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386