Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM338_RS17290 Genome accession   NZ_CP024855
Coordinates   3369590..3370258 (-) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3364590..3375258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM338_RS17260 (AM338_17250) rfaQ 3364762..3365832 (-) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AM338_RS17265 (AM338_17255) waaA 3366239..3367516 (+) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM338_RS17270 (AM338_17260) coaD 3367524..3368003 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AM338_RS17275 (AM338_17265) mutM 3368042..3368851 (-) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM338_RS17280 (AM338_17270) rpmG 3368949..3369116 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM338_RS17285 (AM338_17275) rpmB 3369137..3369373 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM338_RS17290 (AM338_17280) radC 3369590..3370258 (-) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  AM338_RS17295 (AM338_17285) coaBC 3370430..3371650 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM338_RS17300 (AM338_17290) dut 3371628..3372086 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AM338_RS17305 (AM338_17295) slmA 3372193..3372789 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM338_RS17310 (AM338_17300) pyrE 3372826..3373467 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM338_RS17315 (AM338_17305) rph 3373532..3374248 (-) 717 WP_001247093.1 ribonuclease PH -
  AM338_RS17325 (AM338_17315) yicC 3374375..3375238 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=214804 AM338_RS17290 WP_001336353.1 3369590..3370258(-) (radC) [Escherichia coli strain AR_0011]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214804 AM338_RS17290 WP_001336353.1 3369590..3370258(-) (radC) [Escherichia coli strain AR_0011]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496