Detailed information NTG0214784

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM338_RS11840
• Genome accession: NZ_CP024855
• Coordinates: 2325250..2326242 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0011
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2320250..2331242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM338_RS11820 (AM338_11800)	otnK	2321025..2322287 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
AM338_RS11825 (AM338_11805)	ygbL	2322284..2322922 (+)	639	WP_001278994.1	aldolase	-
AM338_RS11830 (AM338_11810)	ygbM	2322927..2323703 (+)	777	WP_100183776.1	HPr family phosphocarrier protein	-
AM338_RS11835 (AM338_11815)	ygbN	2323792..2325156 (+)	1365	WP_000104441.1	GntP family transporter	-
AM338_RS11840 (AM338_11820)	rpoS	2325250..2326242 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM338_RS11845 (AM338_11825)	nlpD	2326305..2327399 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM338_RS11850 (AM338_11830)	pcm	2327584..2328210 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM338_RS11855 (AM338_11835)	surE	2328204..2328965 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM338_RS11860 (AM338_11840)	truD	2328946..2329995 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AM338_RS11865 (AM338_11845)	ispF	2329992..2330471 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM338_RS11870 (AM338_11850)	ispD	2330471..2331181 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=214784 AM338_RS11840 WP_000081550.1 2325250..2326242(-) (rpoS) [Escherichia coli strain AR_0011]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=214784 AM338_RS11840 WP_000081550.1 2325250..2326242(-) (rpoS) [Escherichia coli strain AR_0011]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715