Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM338_RS08190 Genome accession   NZ_CP024855
Coordinates   1570237..1570713 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1565237..1575713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM338_RS08145 (AM338_08145) cobS 1565663..1566406 (-) 744 WP_001326708.1 adenosylcobinamide-GDP ribazoletransferase -
  AM338_RS08150 (AM338_08150) cobU 1566403..1566948 (-) 546 WP_000973176.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AM338_RS27650 (AM338_08155) - 1567100..1567273 (-) 174 Protein_1500 cobalamin biosynthesis protein -
  AM338_RS27655 - 1567252..1567440 (-) 189 Protein_1501 IS4 family transposase -
  AM338_RS08165 (AM338_08160) - 1567573..1568270 (+) 698 WP_094096600.1 IS1-like element IS1A family transposase -
  AM338_RS08170 (AM338_08165) - 1568286..1568618 (+) 333 Protein_1503 hypothetical protein -
  AM338_RS08180 (AM338_08175) - 1568839..1569660 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  AM338_RS08185 (AM338_08180) - 1569742..1570221 (+) 480 WP_000860076.1 antirestriction protein -
  AM338_RS08190 (AM338_08185) radC 1570237..1570713 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  AM338_RS08195 (AM338_08190) yeeT 1570776..1570997 (+) 222 WP_000692301.1 DUF987 domain-containing protein -
  AM338_RS08200 (AM338_08195) cbeA 1571077..1571445 (+) 369 WP_001313071.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM338_RS08205 (AM338_08200) cbtA 1571534..1571908 (+) 375 WP_000854818.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AM338_RS08210 (AM338_08205) yeeW 1571905..1572099 (+) 195 WP_000988600.1 DUF5983 family protein -
  AM338_RS26985 - 1572145..1572225 (+) 81 Protein_1511 hypothetical protein -
  AM338_RS28065 (AM338_08215) - 1572714..1572896 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AM338_RS08225 (AM338_08220) tmaR 1572997..1573326 (-) 330 WP_000450409.1 DUF496 family protein -
  AM338_RS08230 (AM338_08225) yeeA 1573498..1574556 (-) 1059 WP_001200905.1 FUSC family protein -
  AM338_RS08235 (AM338_08230) sbmC 1574754..1575227 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=214770 AM338_RS08190 WP_001186726.1 1570237..1570713(+) (radC) [Escherichia coli strain AR_0011]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214770 AM338_RS08190 WP_001186726.1 1570237..1570713(+) (radC) [Escherichia coli strain AR_0011]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392