Detailed information NTG0214751

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM333_RS24960
• Genome accession: NZ_CP024851
• Coordinates: 4852622..4853614 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4847622..4858614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM333_RS24935 (AM333_24955)	ygbN	4848277..4849641 (+)	1365	WP_000104455.1	GntP family transporter	-
AM333_RS24940 (AM333_24960)	-	4849680..4849916 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AM333_RS24945 (AM333_24965)	-	4849927..4851354 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AM333_RS24950 (AM333_24970)	-	4851354..4851947 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AM333_RS24955 (AM333_24975)	-	4852094..4852501 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
AM333_RS24960 (AM333_24980)	rpoS	4852622..4853614 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM333_RS24965 (AM333_24985)	nlpD	4853677..4854771 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM333_RS24970 (AM333_24990)	pcm	4854956..4855582 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM333_RS24975 (AM333_24995)	surE	4855576..4856337 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM333_RS24980 (AM333_25000)	truD	4856318..4857367 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AM333_RS24985 (AM333_25005)	ispF	4857364..4857843 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM333_RS24990 (AM333_25010)	ispD	4857843..4858553 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=214751 AM333_RS24960 WP_000081550.1 4852622..4853614(-) (rpoS) [Escherichia coli strain AR_0006]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=214751 AM333_RS24960 WP_000081550.1 4852622..4853614(-) (rpoS) [Escherichia coli strain AR_0006]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715