Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AM333_RS24655 Genome accession   NZ_CP024851
Coordinates   4796339..4796854 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR_0006     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4791339..4801854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM333_RS24630 (AM333_24645) ygaZ 4791738..4792475 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AM333_RS24635 (AM333_24650) ygaH 4792465..4792800 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  AM333_RS24640 (AM333_24655) emrR 4792891..4793421 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AM333_RS24645 (AM333_24660) emrA 4793548..4794720 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AM333_RS24650 (AM333_24665) emrB 4794737..4796275 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AM333_RS24655 (AM333_24670) luxS 4796339..4796854 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AM333_RS24660 (AM333_24675) gshA 4797004..4798560 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  AM333_RS24665 (AM333_24680) yqaA 4798633..4799061 (-) 429 WP_001287454.1 YqaA family protein -
  AM333_RS24670 (AM333_24685) yqaB 4799058..4799624 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AM333_RS24700 (AM333_24715) csrA 4800916..4801101 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=214748 AM333_RS24655 WP_001130211.1 4796339..4796854(-) (luxS) [Escherichia coli strain AR_0006]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=214748 AM333_RS24655 WP_001130211.1 4796339..4796854(-) (luxS) [Escherichia coli strain AR_0006]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment