Detailed information
Bioinformatically predicted
Overview
| Name | HI0659 | Type | Machinery gene |
| Locus tag | SP_RS05660 | Genome accession | NC_003028 |
| Coordinates | 1071640..1071933 (+) | Length | 97 a.a. |
| NCBI ID | WP_000794247.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae TIGR4 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1063231..1083773 | 1071640..1071933 | within | 0 |
Gene organization within MGE regions
Location: 1063231..1083773
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SP_RS05595 (SP_1129) | - | 1063231..1064394 (-) | 1164 | WP_001021837.1 | tyrosine-type recombinase/integrase | - |
| SP_RS05600 (SP_1130) | - | 1064469..1065317 (-) | 849 | WP_000700645.1 | helix-turn-helix domain-containing protein | - |
| SP_RS13785 (SP_1131) | - | 1065437..1065790 (+) | 354 | WP_000032304.1 | helix-turn-helix transcriptional regulator | - |
| SP_RS05610 (SP_1132) | - | 1065890..1066156 (+) | 267 | WP_000404762.1 | hypothetical protein | - |
| SP_RS13030 (SP_1133) | - | 1066167..1066319 (+) | 153 | WP_000706985.1 | hypothetical protein | - |
| SP_RS05615 (SP_1134) | - | 1066524..1067141 (+) | 618 | WP_000424676.1 | Rha family transcriptional regulator | - |
| SP_RS05620 (SP_1135) | - | 1067176..1067628 (+) | 453 | WP_000141102.1 | hypothetical protein | - |
| SP_RS05625 (SP_1136) | - | 1067625..1068071 (+) | 447 | WP_000171242.1 | DnaD domain protein | - |
| SP_RS05630 (SP_1137) | - | 1068083..1068967 (+) | 885 | WP_000838905.1 | ATP-binding protein | - |
| SP_RS05635 (SP_1139) | - | 1069216..1069866 (+) | 651 | WP_000138311.1 | hypothetical protein | - |
| SP_RS05640 (SP_1140) | - | 1069913..1070341 (+) | 429 | WP_000918210.1 | hypothetical protein | - |
| SP_RS05645 (SP_1141) | - | 1070349..1070660 (+) | 312 | WP_001113833.1 | hypothetical protein | - |
| SP_RS05650 (SP_1142) | - | 1070678..1071088 (+) | 411 | WP_000162610.1 | hypothetical protein | - |
| SP_RS05655 (SP_1143) | - | 1071285..1071650 (+) | 366 | WP_000551587.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SP_RS05660 (SP_1144) | HI0659 | 1071640..1071933 (+) | 294 | WP_000794247.1 | helix-turn-helix domain-containing protein | Machinery gene |
| SP_RS05665 (SP_1145) | - | 1071951..1073141 (+) | 1191 | WP_000123149.1 | hypothetical protein | - |
| SP_RS13035 (SP_1146) | - | 1073144..1073320 (+) | 177 | WP_000346914.1 | hypothetical protein | - |
| SP_RS12125 | - | 1073640..1074086 (-) | 447 | WP_061631657.1 | tyrosine-type recombinase/integrase | - |
| SP_RS12130 | - | 1073986..1074831 (-) | 846 | Protein_1084 | IS630 family transposase | - |
| SP_RS12795 | - | 1075002..1075157 (+) | 156 | Protein_1085 | diacylglycerol/lipid kinase family protein | - |
| SP_RS05680 (SP_1151) | rexB | 1075357..1078632 (+) | 3276 | WP_000772372.1 | ATP-dependent nuclease subunit B | - |
| SP_RS05685 (SP_1152) | addA | 1078629..1082279 (+) | 3651 | WP_000767212.1 | helicase-exonuclease AddAB subunit AddA | - |
| SP_RS05690 (SP_1153) | - | 1082494..1083672 (+) | 1179 | WP_000174755.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10751.45 Da Isoelectric Point: 5.1991
>NTDB_id=21472 SP_RS05660 WP_000794247.1 1071640..1071933(+) (HI0659) [Streptococcus pneumoniae TIGR4]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEHEQV
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEHEQV
Nucleotide
Download Length: 294 bp
>NTDB_id=21472 SP_RS05660 WP_000794247.1 1071640..1071933(+) (HI0659) [Streptococcus pneumoniae TIGR4]
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAGGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGTGAGCTTATCGAGGCTAGAAATGAAAAGGGTATTAGTCAGAAGAAACTAGAGGAGATGA
GCGGTGTTAGTCAGCCAGTTATCGCTAGAATGGAAACAGGAAAGACAAGCCCACAACTTGATACAGTATTAAAAGTGTTG
GCAAGTCTTGGTAAGACCTTAGCTGTTGTACCATTAGAGCATGAGCAGGTTTAG
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAGGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGTGAGCTTATCGAGGCTAGAAATGAAAAGGGTATTAGTCAGAAGAAACTAGAGGAGATGA
GCGGTGTTAGTCAGCCAGTTATCGCTAGAATGGAAACAGGAAAGACAAGCCCACAACTTGATACAGTATTAAAAGTGTTG
GCAAGTCTTGGTAAGACCTTAGCTGTTGTACCATTAGAGCATGAGCAGGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| HI0659 | Haemophilus influenzae Rd KW20 |
57.143 |
93.814 |
0.536 |