Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BWQ98_RS09890 Genome accession   NZ_CP019299
Coordinates   1823448..1824401 (-) Length   317 a.a.
NCBI ID   WP_050233486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1818448..1829401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS09865 (BWQ98_09885) - 1819209..1819832 (-) 624 WP_050233484.1 hypothetical protein -
  BWQ98_RS09870 (BWQ98_09890) jag 1819883..1820869 (-) 987 WP_000260018.1 RNA-binding cell elongation regulator Jag/EloR -
  BWQ98_RS09875 (BWQ98_09895) - 1820888..1821712 (-) 825 WP_201417385.1 membrane protein insertase YidC -
  BWQ98_RS09880 (BWQ98_09900) rnpA 1821687..1822058 (-) 372 WP_000739246.1 ribonuclease P protein component -
  BWQ98_RS11740 - 1822075..1822206 (-) 132 WP_000768904.1 hypothetical protein -
  BWQ98_RS09885 (BWQ98_09905) - 1822207..1823397 (-) 1191 WP_050233485.1 acetate kinase -
  BWQ98_RS09890 (BWQ98_09910) comYH 1823448..1824401 (-) 954 WP_050233486.1 class I SAM-dependent methyltransferase Machinery gene
  BWQ98_RS09895 (BWQ98_09915) - 1824462..1825056 (-) 595 Protein_1841 methyltransferase domain-containing protein -
  BWQ98_RS09900 (BWQ98_09920) comGG/cglG 1825193..1825606 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  BWQ98_RS09905 (BWQ98_09925) comGF/cglF 1825584..1826045 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  BWQ98_RS09910 (BWQ98_09930) comGE/cglE 1826008..1826310 (-) 303 WP_226372546.1 competence type IV pilus minor pilin ComGE Machinery gene
  BWQ98_RS09915 (BWQ98_09935) comGD/cglD 1826273..1826677 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  BWQ98_RS09920 (BWQ98_09940) comGC/cglC 1826670..1826996 (-) 327 WP_000738636.1 comG operon protein ComGC Machinery gene
  BWQ98_RS09925 (BWQ98_09945) comGB/cglB 1826998..1828014 (-) 1017 WP_078134945.1 competence type IV pilus assembly protein ComGB Machinery gene
  BWQ98_RS09930 (BWQ98_09950) comGA/cglA/cilD 1827962..1828903 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  BWQ98_RS09935 (BWQ98_09955) - 1828979..1829344 (-) 366 WP_050212688.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2585

>NTDB_id=214719 BWQ98_RS09890 WP_050233486.1 1823448..1824401(-) (comYH) [Streptococcus pneumoniae strain HKU1-14]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEVAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=214719 BWQ98_RS09890 WP_050233486.1 1823448..1824401(-) (comYH) [Streptococcus pneumoniae strain HKU1-14]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAGTAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment