Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM333_RS08290 Genome accession   NZ_CP024851
Coordinates   1593736..1594212 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain AR_0006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588736..1599212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM333_RS08265 (AM333_08265) - 1591776..1591971 (+) 196 Protein_1481 DUF905 family protein -
  AM333_RS08275 (AM333_08275) - 1592089..1592907 (+) 819 WP_001234656.1 DUF932 domain-containing protein -
  AM333_RS08285 (AM333_08285) - 1593249..1593720 (+) 472 Protein_1483 antirestriction protein -
  AM333_RS08290 (AM333_08290) radC 1593736..1594212 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  AM333_RS08295 (AM333_08295) - 1594275..1594496 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM333_RS08300 (AM333_08300) - 1594659..1595027 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM333_RS08305 (AM333_08305) - 1595117..1595215 (+) 99 Protein_1487 TA system toxin CbtA family protein -
  AM333_RS08315 (AM333_08315) mtnK 1595954..1597213 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  AM333_RS08320 (AM333_08320) mtnA 1597223..1598338 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  AM333_RS08325 (AM333_08325) - 1598369..1599010 (+) 642 WP_000439687.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=214709 AM333_RS08290 WP_001186775.1 1593736..1594212(+) (radC) [Escherichia coli strain AR_0006]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214709 AM333_RS08290 WP_001186775.1 1593736..1594212(+) (radC) [Escherichia coli strain AR_0006]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment