Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWP24_RS02745 Genome accession   NZ_CP019293
Coordinates   551933..552451 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain LMB29     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 546933..557451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP24_RS02735 (BWP24_02775) gshA 549650..551218 (+) 1569 WP_005426650.1 glutamate--cysteine ligase -
  BWP24_RS02740 (BWP24_02780) - 551238..551843 (+) 606 WP_005438049.1 hypothetical protein -
  BWP24_RS02745 (BWP24_02785) luxS 551933..552451 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  BWP24_RS02750 (BWP24_02790) - 552540..553814 (-) 1275 WP_005426658.1 HlyC/CorC family transporter -
  BWP24_RS02755 (BWP24_02795) - 553970..554764 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  BWP24_RS02760 (BWP24_02800) ffh 554978..556360 (+) 1383 WP_005462555.1 signal recognition particle protein -
  BWP24_RS02765 (BWP24_02805) rpsP 556571..556819 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  BWP24_RS02770 (BWP24_02810) rimM 556847..557395 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=214637 BWP24_RS02745 WP_005426655.1 551933..552451(+) (luxS) [Vibrio campbellii strain LMB29]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=214637 BWP24_RS02745 WP_005426655.1 551933..552451(+) (luxS) [Vibrio campbellii strain LMB29]
ATGCCTTTATTAGACAGCTTTACCGTGGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTTGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGATGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTCAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment