Detailed information NTG0214634

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWP24_RS02615
• Genome accession: NZ_CP019293
• Coordinates: 529200..530186 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LMB29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 524200..535186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWP24_RS02580 (BWP24_02620)	ftsB	524206..524487 (+)	282	WP_005452106.1	cell division protein FtsB	-
BWP24_RS02585 (BWP24_02625)	ispD	524489..525199 (+)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BWP24_RS02590 (BWP24_02630)	ispF	525214..525690 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWP24_RS02595 (BWP24_02635)	truD	525736..526779 (+)	1044	WP_077200201.1	tRNA pseudouridine(13) synthase TruD	-
BWP24_RS02600 (BWP24_02640)	surE	526779..527555 (+)	777	WP_082242666.1	5'/3'-nucleotidase SurE	-
BWP24_RS02605 (BWP24_02645)	-	527555..528181 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BWP24_RS02610 (BWP24_02650)	-	528196..529119 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
BWP24_RS02615 (BWP24_02655)	rpoS	529200..530186 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
BWP24_RS02620 (BWP24_02660)	mutS	530275..532836 (-)	2562	WP_077200202.1	DNA mismatch repair protein MutS	-
BWP24_RS02625 (BWP24_02665)	pncC	532922..533404 (+)	483	WP_077200203.1	nicotinamide-nucleotide amidase	-
BWP24_RS02630 (BWP24_02670)	recA	533605..534648 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=214634 BWP24_RS02615 WP_005425361.1 529200..530186(+) (rpoS) [Vibrio campbellii strain LMB29]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=214634 BWP24_RS02615 WP_005425361.1 529200..530186(+) (rpoS) [Vibrio campbellii strain LMB29]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857