Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC53_RS09700 Genome accession   NZ_CP019290
Coordinates   1883899..1885320 (+) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus strain FORC_053     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1878899..1890320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS09675 (FORC53_1710) cobC 1879582..1880220 (-) 639 WP_013571943.1 alpha-ribazole phosphatase -
  FORC53_RS09680 (FORC53_1711) cobU 1880230..1880790 (-) 561 WP_198434243.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FORC53_RS09685 (FORC53_1712) - 1880793..1881560 (-) 768 WP_118893798.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC53_RS09690 (FORC53_1713) cobT 1881562..1882590 (-) 1029 WP_118893799.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC53_RS09695 (FORC53_1715) - 1883127..1883825 (+) 699 WP_118893800.1 oxidoreductase -
  FORC53_RS09700 (FORC53_1716) sbcB 1883899..1885320 (+) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  FORC53_RS09705 (FORC53_1717) - 1885367..1885738 (+) 372 WP_011080627.1 CidA/LrgA family protein -
  FORC53_RS09710 (FORC53_1718) - 1885741..1886418 (+) 678 WP_011080628.1 LrgB family protein -
  FORC53_RS09715 (FORC53_1719) - 1886731..1887123 (+) 393 WP_118893801.1 hypothetical protein -
  FORC53_RS09720 (FORC53_1720) - 1887326..1888429 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC53_RS09725 (FORC53_1721) - 1888503..1888907 (-) 405 WP_011080631.1 hypothetical protein -
  FORC53_RS09730 (FORC53_1722) - 1889146..1889913 (-) 768 WP_011080632.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=214596 FORC53_RS09700 WP_011150112.1 1883899..1885320(+) (sbcB) [Vibrio vulnificus strain FORC_053]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=214596 FORC53_RS09700 WP_011150112.1 1883899..1885320(+) (sbcB) [Vibrio vulnificus strain FORC_053]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCAATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment