Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC53_RS02850 Genome accession   NZ_CP019290
Coordinates   571944..572462 (+) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain FORC_053     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 566944..577462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS02840 (FORC53_0497) gshA 569685..571250 (+) 1566 WP_118893297.1 glutamate--cysteine ligase -
  FORC53_RS02845 (FORC53_0498) - 571288..571893 (+) 606 WP_223370886.1 hypothetical protein -
  FORC53_RS02850 (FORC53_0499) luxS 571944..572462 (+) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  FORC53_RS02855 (FORC53_0500) - 572552..573829 (-) 1278 WP_011079538.1 HlyC/CorC family transporter -
  FORC53_RS02860 (FORC53_0501) - 573916..574710 (-) 795 WP_011079539.1 cytochrome C assembly family protein -
  FORC53_RS02865 (FORC53_0502) ffh 574924..576300 (+) 1377 WP_011079540.1 signal recognition particle protein -
  FORC53_RS02870 (FORC53_0503) rpsP 576575..576823 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC53_RS02875 (FORC53_0504) rimM 576839..577387 (+) 549 WP_011079542.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=214587 FORC53_RS02850 WP_011079537.1 571944..572462(+) (luxS) [Vibrio vulnificus strain FORC_053]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=214587 FORC53_RS02850 WP_011079537.1 571944..572462(+) (luxS) [Vibrio vulnificus strain FORC_053]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCAGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAATGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment