Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CU077_RS24340 Genome accession   NZ_CP024826
Coordinates   4823395..4824063 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain CREC-544     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4818395..4829063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU077_RS24310 (CU077_24310) rfaQ 4818573..4819631 (-) 1059 WP_000360395.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CU077_RS24315 (CU077_24315) waaA 4820044..4821321 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CU077_RS24320 (CU077_24320) coaD 4821329..4821808 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CU077_RS24325 (CU077_24325) mutM 4821847..4822656 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CU077_RS24330 (CU077_24330) rpmG 4822754..4822921 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CU077_RS24335 (CU077_24335) rpmB 4822942..4823178 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CU077_RS24340 (CU077_24340) radC 4823395..4824063 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CU077_RS24345 (CU077_24345) coaBC 4824235..4825455 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CU077_RS24350 (CU077_24350) dut 4825433..4825891 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CU077_RS24355 (CU077_24355) slmA 4825998..4826594 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  CU077_RS24360 (CU077_24360) pyrE 4826631..4827272 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CU077_RS24365 (CU077_24365) rph 4827338..4828054 (-) 717 WP_001247093.1 ribonuclease PH -
  CU077_RS24375 (CU077_24375) yicC 4828181..4829044 (+) 864 WP_000621328.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=214583 CU077_RS24340 WP_001297375.1 4823395..4824063(-) (radC) [Escherichia coli strain CREC-544]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214583 CU077_RS24340 WP_001297375.1 4823395..4824063(-) (radC) [Escherichia coli strain CREC-544]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTTACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496