Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CU077_RS20485 Genome accession   NZ_CP024826
Coordinates   4068456..4068932 (+) Length   158 a.a.
NCBI ID   WP_001605874.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-544     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4063456..4073932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU077_RS20470 (CU077_20470) - 4063887..4066733 (+) 2847 WP_001605870.1 Ag43/Cah family autotransporter adhesin -
  CU077_RS20475 (CU077_20475) - 4067061..4067879 (+) 819 WP_001605871.1 DUF932 domain-containing protein -
  CU077_RS20480 (CU077_20480) - 4067961..4068440 (+) 480 WP_001605873.1 antirestriction protein -
  CU077_RS20485 (CU077_20485) radC 4068456..4068932 (+) 477 WP_001605874.1 RadC family protein Machinery gene
  CU077_RS20490 (CU077_20490) yeeT 4069001..4069222 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  CU077_RS20495 (CU077_20495) cbeA 4069302..4069676 (+) 375 WP_001605875.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CU077_RS20500 (CU077_20500) - 4069723..4070100 (+) 378 WP_000854692.1 TA system toxin CbtA family protein -
  CU077_RS26280 - 4070097..4070246 (+) 150 Protein_3810 DUF5983 family protein -
  CU077_RS20505 (CU077_20505) - 4070322..4070519 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  CU077_RS20510 (CU077_20510) - 4070604..4071446 (+) 843 WP_001529559.1 DUF4942 domain-containing protein -
  CU077_RS20515 (CU077_20515) - 4071789..4071959 (+) 171 Protein_3813 IS110 family transposase -
  CU077_RS20520 (CU077_20520) - 4072770..4073753 (+) 984 WP_001298261.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.29 Da        Isoelectric Point: 7.2020

>NTDB_id=214568 CU077_RS20485 WP_001605874.1 4068456..4068932(+) (radC) [Escherichia coli strain CREC-544]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRIITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214568 CU077_RS20485 WP_001605874.1 4068456..4068932(+) (radC) [Escherichia coli strain CREC-544]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGATTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392