Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CU077_RS18865 Genome accession   NZ_CP024826
Coordinates   3743987..3744502 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain CREC-544     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3738987..3749502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU077_RS18840 (CU077_18840) ygaZ 3739386..3740123 (+) 738 WP_000445648.1 L-valine exporter subunit YgaZ -
  CU077_RS18845 (CU077_18845) ygaH 3740113..3740448 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CU077_RS18850 (CU077_18850) emrR 3740539..3741069 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CU077_RS18855 (CU077_18855) emrA 3741196..3742368 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CU077_RS18860 (CU077_18860) emrB 3742385..3743923 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CU077_RS18865 (CU077_18865) luxS 3743987..3744502 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CU077_RS18870 (CU077_18870) gshA 3744652..3746208 (-) 1557 WP_000611781.1 glutamate--cysteine ligase -
  CU077_RS18875 (CU077_18875) yqaA 3746281..3746709 (-) 429 WP_001287454.1 YqaA family protein -
  CU077_RS18880 (CU077_18880) yqaB 3746706..3747272 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CU077_RS18910 (CU077_18910) csrA 3748438..3748623 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=214561 CU077_RS18865 WP_001130208.1 3743987..3744502(-) (luxS) [Escherichia coli strain CREC-544]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=214561 CU077_RS18865 WP_001130208.1 3743987..3744502(-) (luxS) [Escherichia coli strain CREC-544]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737