Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWI90_RS05480 Genome accession   NZ_CP019280
Coordinates   1064041..1064670 (+) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain 13P484A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059041..1069670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI90_RS05455 (BWI90_05465) ycbZ 1059442..1061202 (-) 1761 WP_000156518.1 AAA family ATPase -
  BWI90_RS05460 (BWI90_05470) matP 1061388..1061840 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BWI90_RS05465 (BWI90_05475) ompA 1061916..1062956 (-) 1041 WP_000750416.1 porin OmpA -
  BWI90_RS05475 (BWI90_05485) sulA 1063313..1063822 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BWI90_RS05480 (BWI90_05490) sxy/tfoX 1064041..1064670 (+) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWI90_RS05485 (BWI90_05495) yccS 1064633..1066795 (-) 2163 WP_023281787.1 YccS family putative transporter -
  BWI90_RS05490 (BWI90_05500) yccF 1066805..1067251 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BWI90_RS05495 (BWI90_05505) helD 1067374..1069428 (+) 2055 WP_033554506.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=214543 BWI90_RS05480 WP_000839152.1 1064041..1064670(+) (sxy/tfoX) [Escherichia coli strain 13P484A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214543 BWI90_RS05480 WP_000839152.1 1064041..1064670(+) (sxy/tfoX) [Escherichia coli strain 13P484A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment