Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CU077_RS09700 Genome accession   NZ_CP024826
Coordinates   1923198..1924625 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-544     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918198..1929625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU077_RS09670 (CU077_09670) yeeZ 1918253..1919077 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CU077_RS09675 (CU077_09675) yeeY 1919123..1920052 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  CU077_RS09680 (CU077_09680) yoeI 1920267..1920329 (+) 63 WP_010723108.1 membrane protein YoeI -
  CU077_RS09685 (CU077_09685) plaP 1920319..1921677 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CU077_RS09690 (CU077_09690) tsuA 1921856..1922914 (+) 1059 WP_061092869.1 thiosulfate utilization transporter TsuA/YeeE -
  CU077_RS09695 (CU077_09695) tsuB 1922928..1923155 (+) 228 WP_061092870.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CU077_RS09700 (CU077_09700) sbcB 1923198..1924625 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  CU077_RS09705 (CU077_09705) dacD 1924834..1926000 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CU077_RS09710 (CU077_09710) sbmC 1926119..1926592 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  CU077_RS09715 (CU077_09715) yeeA 1926790..1927848 (+) 1059 WP_001200890.1 FUSC family protein -
  CU077_RS09720 (CU077_09720) tmaR 1928020..1928349 (+) 330 WP_000450409.1 DUF496 family protein -
  CU077_RS09725 (CU077_09725) - 1928450..1928893 (-) 444 WP_061092871.1 EutP/PduV family microcompartment system protein -
  CU077_RS09730 (CU077_09730) pduU 1928898..1929248 (-) 351 WP_001524968.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=214537 CU077_RS09700 WP_000980557.1 1923198..1924625(-) (sbcB) [Escherichia coli strain CREC-544]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=214537 CU077_RS09700 WP_000980557.1 1923198..1924625(-) (sbcB) [Escherichia coli strain CREC-544]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583