Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWI89_RS09260 Genome accession   NZ_CP019273
Coordinates   1774326..1774955 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 13P477T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769326..1779955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI89_RS09245 (BWI89_09255) helD 1769568..1771622 (-) 2055 WP_148119590.1 DNA helicase IV -
  BWI89_RS09250 (BWI89_09260) yccF 1771745..1772191 (+) 447 WP_001261236.1 YccF domain-containing protein -
  BWI89_RS09255 (BWI89_09265) yccS 1772201..1774363 (+) 2163 WP_000875041.1 YccS family putative transporter -
  BWI89_RS09260 (BWI89_09270) sxy/tfoX 1774326..1774955 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWI89_RS09265 (BWI89_09275) sulA 1775174..1775683 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  BWI89_RS09275 (BWI89_09285) ompA 1776040..1777080 (+) 1041 WP_001314606.1 porin OmpA -
  BWI89_RS09280 (BWI89_09290) matP 1777156..1777608 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BWI89_RS09285 (BWI89_09295) ycbZ 1777794..1779554 (+) 1761 WP_000156476.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=214524 BWI89_RS09260 WP_000839153.1 1774326..1774955(-) (sxy/tfoX) [Escherichia coli strain 13P477T]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214524 BWI89_RS09260 WP_000839153.1 1774326..1774955(-) (sxy/tfoX) [Escherichia coli strain 13P477T]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment