Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CU078_RS25785 Genome accession   NZ_CP024821
Coordinates   4956849..4958276 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-591     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4951849..4963276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU078_RS25755 (CU078_25755) yeeZ 4951904..4952728 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  CU078_RS25760 (CU078_25760) yeeY 4952774..4953703 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CU078_RS25765 (CU078_25765) yoeI 4953918..4953980 (+) 63 WP_010723108.1 membrane protein YoeI -
  CU078_RS25770 (CU078_25770) plaP 4953970..4955328 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CU078_RS25775 (CU078_25775) tsuA 4955507..4956565 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  CU078_RS25780 (CU078_25780) tsuB 4956579..4956806 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CU078_RS25785 (CU078_25785) sbcB 4956849..4958276 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  CU078_RS25790 (CU078_25790) dacD 4958485..4959651 (+) 1167 WP_001464461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CU078_RS25795 (CU078_25795) sbmC 4959770..4960243 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CU078_RS25800 (CU078_25800) yeeA 4960441..4961499 (+) 1059 WP_072646463.1 FUSC family protein -
  CU078_RS25805 (CU078_25805) tmaR 4961671..4962000 (+) 330 WP_000450409.1 DUF496 family protein -
  CU078_RS25810 (CU078_25810) - 4962101..4962283 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CU078_RS25815 (CU078_25815) - 4962355..4962483 (+) 129 Protein_4729 transposase domain-containing protein -
  CU078_RS29190 - 4962772..4962852 (-) 81 Protein_4730 hypothetical protein -
  CU078_RS25820 (CU078_25820) yeeW 4962898..4963092 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=214501 CU078_RS25785 WP_000980608.1 4956849..4958276(-) (sbcB) [Escherichia coli strain CREC-591]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=214501 CU078_RS25785 WP_000980608.1 4956849..4958276(-) (sbcB) [Escherichia coli strain CREC-591]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTTCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581