Detailed information NTG0214488

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CU078_RS22105
• Genome accession: NZ_CP024821
• Coordinates: 4191626..4192618 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CREC-591
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4186626..4197618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CU078_RS22075 (CU078_22075)	ispD	4186687..4187397 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CU078_RS22080 (CU078_22080)	ispF	4187397..4187876 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CU078_RS22085 (CU078_22085)	truD	4187873..4188922 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
CU078_RS22090 (CU078_22090)	surE	4188903..4189664 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CU078_RS22095 (CU078_22095)	pcm	4189658..4190284 (+)	627	WP_069723256.1	protein-L-isoaspartate O-methyltransferase	-
CU078_RS22100 (CU078_22100)	nlpD	4190469..4191563 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CU078_RS22105 (CU078_22105)	rpoS	4191626..4192618 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CU078_RS22110 (CU078_22110)	-	4192739..4193146 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
CU078_RS22115 (CU078_22115)	-	4193293..4193886 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CU078_RS22120 (CU078_22120)	-	4193886..4195313 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CU078_RS22125 (CU078_22125)	-	4195324..4195560 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CU078_RS22130 (CU078_22130)	ygbN	4195599..4196963 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=214488 CU078_RS22105 WP_000081550.1 4191626..4192618(+) (rpoS) [Escherichia coli strain CREC-591]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=214488 CU078_RS22105 WP_000081550.1 4191626..4192618(+) (rpoS) [Escherichia coli strain CREC-591]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715