Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWI87_RS12125 Genome accession   NZ_CP019267
Coordinates   2390767..2391396 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 13C1079T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2385767..2396396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI87_RS12100 (BWI87_12100) ycbZ 2386157..2387917 (-) 1761 WP_000156526.1 AAA family ATPase -
  BWI87_RS12105 (BWI87_12105) matP 2388103..2388555 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  BWI87_RS12110 (BWI87_12110) ompA 2388630..2389682 (-) 1053 WP_000750419.1 porin OmpA -
  BWI87_RS12120 (BWI87_12120) sulA 2390039..2390548 (-) 510 WP_063100170.1 SOS-induced cell division inhibitor SulA -
  BWI87_RS12125 (BWI87_12125) sxy/tfoX 2390767..2391396 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWI87_RS12130 (BWI87_12130) yccS 2391359..2393521 (-) 2163 WP_000875044.1 YccS family putative transporter -
  BWI87_RS12135 (BWI87_12135) yccF 2393531..2393977 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BWI87_RS12140 (BWI87_12140) helD 2394100..2396154 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=214485 BWI87_RS12125 WP_000839153.1 2390767..2391396(+) (sxy/tfoX) [Escherichia coli strain 13C1079T]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214485 BWI87_RS12125 WP_000839153.1 2390767..2391396(+) (sxy/tfoX) [Escherichia coli strain 13C1079T]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment