Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CU078_RS19795 Genome accession   NZ_CP024821
Coordinates   3747666..3748142 (+) Length   158 a.a.
NCBI ID   WP_001186740.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3742666..3753142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU078_RS19770 (CU078_19770) - 3743083..3745929 (+) 2847 WP_086528316.1 Ag43/Cah family autotransporter adhesin -
  CU078_RS19785 (CU078_19785) - 3746256..3747074 (+) 819 WP_001234702.1 DUF932 domain-containing protein -
  CU078_RS19790 (CU078_19790) - 3747165..3747650 (+) 486 WP_063097556.1 antirestriction protein -
  CU078_RS19795 (CU078_19795) radC 3747666..3748142 (+) 477 WP_001186740.1 RadC family protein Machinery gene
  CU078_RS19800 (CU078_19800) - 3748211..3748432 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  CU078_RS19805 (CU078_19805) - 3748512..3748880 (+) 369 WP_071587515.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CU078_RS19810 (CU078_19810) cbtA 3748970..3749353 (+) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CU078_RS19815 (CU078_19815) - 3749344..3749832 (+) 489 WP_001177592.1 DUF5983 family protein -
  CU078_RS19820 (CU078_19820) - 3749844..3750041 (+) 198 WP_000839263.1 DUF957 domain-containing protein -
  CU078_RS19825 (CU078_19825) - 3750138..3750983 (+) 846 WP_072735927.1 DUF4942 domain-containing protein -
  CU078_RS19835 (CU078_19835) mug 3751282..3751788 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17741.31 Da        Isoelectric Point: 6.7742

>NTDB_id=214481 CU078_RS19795 WP_001186740.1 3747666..3748142(+) (radC) [Escherichia coli strain CREC-591]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIADETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214481 CU078_RS19795 WP_001186740.1 3747666..3748142(+) (radC) [Escherichia coli strain CREC-591]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCTGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGATGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386