Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWI86_RS17100 Genome accession   NZ_CP019259
Coordinates   3312988..3313617 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 13C1065T     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3307988..3318617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI86_RS17085 (BWI86_17085) helD 3308230..3310284 (-) 2055 WP_072646045.1 DNA helicase IV -
  BWI86_RS17090 (BWI86_17090) yccF 3310407..3310853 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BWI86_RS17095 (BWI86_17095) yccS 3310863..3313025 (+) 2163 WP_000875061.1 YccS family putative transporter -
  BWI86_RS17100 (BWI86_17100) sxy/tfoX 3312988..3313617 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWI86_RS17105 (BWI86_17105) sulA 3313836..3314345 (+) 510 Protein_3115 SOS-induced cell division inhibitor SulA -
  BWI86_RS17115 (BWI86_17115) ompA 3314701..3315741 (+) 1041 WP_072646047.1 porin OmpA -
  BWI86_RS17120 (BWI86_17120) matP 3315817..3316269 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BWI86_RS17125 (BWI86_17125) ycbZ 3316455..3318215 (+) 1761 WP_072646044.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=214471 BWI86_RS17100 WP_000839153.1 3312988..3313617(-) (sxy/tfoX) [Escherichia coli strain 13C1065T]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214471 BWI86_RS17100 WP_000839153.1 3312988..3313617(-) (sxy/tfoX) [Escherichia coli strain 13C1065T]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment