Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CU078_RS13660 Genome accession   NZ_CP024821
Coordinates   2543149..2543625 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2538149..2548625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU078_RS13640 (CU078_13640) - 2538564..2541410 (+) 2847 WP_021548587.1 Ag43/Cah family autotransporter adhesin -
  CU078_RS13650 (CU078_13650) - 2541738..2542556 (+) 819 WP_001234381.1 DUF932 domain-containing protein -
  CU078_RS13655 (CU078_13655) - 2542648..2543133 (+) 486 WP_000214415.1 antirestriction protein -
  CU078_RS13660 (CU078_13660) radC 2543149..2543625 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  CU078_RS13665 (CU078_13665) - 2543694..2543915 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  CU078_RS29780 (CU078_13670) - 2543989..2544264 (+) 276 WP_072644870.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CU078_RS13675 (CU078_13675) - 2544261..2544749 (+) 489 WP_000761717.1 DUF5983 family protein -
  CU078_RS13680 (CU078_13680) - 2544761..2544958 (+) 198 WP_000838536.1 DUF957 domain-containing protein -
  CU078_RS13685 (CU078_13685) - 2545043..2545885 (+) 843 WP_001280499.1 DUF4942 domain-containing protein -
  CU078_RS30065 - 2546260..2546374 (+) 115 Protein_2516 integrase -
  CU078_RS13695 (CU078_13695) cadC 2546634..2548172 (+) 1539 WP_001187170.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=214449 CU078_RS13660 WP_001186725.1 2543149..2543625(+) (radC) [Escherichia coli strain CREC-591]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214449 CU078_RS13660 WP_001186725.1 2543149..2543625(+) (radC) [Escherichia coli strain CREC-591]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399