Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BWI82_RS25585 Genome accession   NZ_CP019243
Coordinates   4996121..4996750 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Combat2C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4991121..5001750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI82_RS25560 (BWI82_25590) ycbZ 4991523..4993283 (-) 1761 WP_148116746.1 AAA family ATPase -
  BWI82_RS25565 (BWI82_25595) matP 4993469..4993921 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  BWI82_RS25570 (BWI82_25600) ompA 4993997..4995037 (-) 1041 WP_001313715.1 porin OmpA -
  BWI82_RS25580 (BWI82_25610) sulA 4995393..4995902 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  BWI82_RS25585 (BWI82_25615) sxy/tfoX 4996121..4996750 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BWI82_RS25590 (BWI82_25620) yccS 4996713..4998875 (-) 2163 WP_000875067.1 YccS family putative transporter -
  BWI82_RS25595 (BWI82_25625) yccF 4998885..4999331 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BWI82_RS25600 (BWI82_25630) helD 4999454..5001508 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=214385 BWI82_RS25585 WP_000839153.1 4996121..4996750(+) (sxy/tfoX) [Escherichia coli strain Combat2C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=214385 BWI82_RS25585 WP_000839153.1 4996121..4996750(+) (sxy/tfoX) [Escherichia coli strain Combat2C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment