Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECs_1403 Genome accession   NC_002695
Coordinates   1453354..1453830 (+) Length   158 a.a.
NCBI ID   NP_309430.1    Uniprot ID   Q8X5B0
Organism   Escherichia coli O157:H7 str. Sakai     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1448354..1458830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECs_1398 - 1449632..1450537 (+) 906 NP_309425.1 chemotaxis protein -
  ECs_1399 - 1450534..1451604 (+) 1071 NP_309426.1 phospholipase -
  ECs_1401 - 1451944..1452762 (+) 819 NP_309428.1 hypothetical protein -
  ECs_1402 - 1452853..1453338 (+) 486 NP_309429.1 antirestriction protein -
  ECs_1403 radC 1453354..1453830 (+) 477 NP_309430.1 DNA repair protein Machinery gene
  ECs_1404 - 1453893..1454114 (+) 222 NP_309431.1 hypothetical protein -
  ECs_1405 - 1454277..1454651 (+) 375 NP_309432.1 antitoxin of toxin-antitoxin system -
  ECs_1406 - 1454698..1455072 (+) 375 NP_309433.1 hypothetical protein -
  ECs_1407 - 1455069..1455560 (+) 492 NP_309434.3 hypothetical protein -
  ECs_1408 - 1455572..1455769 (+) 198 NP_309435.1 hypothetical protein -
  ECs_1409 - 1455854..1456696 (+) 843 NP_309436.1 restriction methylase -
  ECs_1410 ghrA 1457167..1458105 (+) 939 NP_309437.2 glyoxylate/hydroxypyruvate reductase A -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.28 Da        Isoelectric Point: 6.9242

>NTDB_id=21436 ECs_1403 NP_309430.1 1453354..1453830(+) (radC) [Escherichia coli O157:H7 str. Sakai]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=21436 ECs_1403 NP_309430.1 1453354..1453830(+) (radC) [Escherichia coli O157:H7 str. Sakai]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X5B0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment