Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CU080_RS03845 Genome accession   NZ_CP024815
Coordinates   763501..764169 (+) Length   222 a.a.
NCBI ID   WP_100183809.1    Uniprot ID   -
Organism   Escherichia coli strain CREC-629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758501..769169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU080_RS03810 (CU080_03810) yicC 758521..759384 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  CU080_RS03820 (CU080_03820) rph 759511..760227 (+) 717 WP_001247093.1 ribonuclease PH -
  CU080_RS03825 (CU080_03825) pyrE 760292..760933 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CU080_RS03830 (CU080_03830) slmA 760970..761566 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CU080_RS03835 (CU080_03835) dut 761673..762131 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CU080_RS03840 (CU080_03840) coaBC 762109..763329 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CU080_RS03845 (CU080_03845) radC 763501..764169 (+) 669 WP_100183809.1 DNA repair protein RadC Machinery gene
  CU080_RS03850 (CU080_03850) rpmB 764386..764622 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CU080_RS03855 (CU080_03855) rpmG 764643..764810 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CU080_RS03860 (CU080_03860) mutM 764908..765717 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CU080_RS03865 (CU080_03865) coaD 765756..766235 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CU080_RS03870 (CU080_03870) waaA 766243..767520 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CU080_RS03875 (CU080_03875) rfaQ 767927..768997 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25318.46 Da        Isoelectric Point: 7.8777

>NTDB_id=214359 CU080_RS03845 WP_100183809.1 763501..764169(+) (radC) [Escherichia coli strain CREC-629]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREVI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214359 CU080_RS03845 WP_100183809.1 763501..764169(+) (radC) [Escherichia coli strain CREC-629]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGTGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment