Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RA876_RS17320 Genome accession   NZ_CP019240
Coordinates   3568831..3570429 (-) Length   532 a.a.
NCBI ID   WP_075585254.1    Uniprot ID   -
Organism   Rhodoferax antarcticus strain DSMZ24876     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563831..3575429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA876_RS17295 (RA876_17295) - 3564715..3565203 (+) 489 WP_075585249.1 nuclear transport factor 2 family protein -
  RA876_RS17300 (RA876_17300) - 3565224..3565940 (+) 717 WP_075585250.1 SDR family NAD(P)-dependent oxidoreductase -
  RA876_RS17305 (RA876_17305) - 3565992..3566795 (-) 804 WP_075585251.1 YecA family protein -
  RA876_RS17310 (RA876_17310) - 3566851..3567303 (-) 453 WP_075585252.1 putative toxin-antitoxin system toxin component, PIN family -
  RA876_RS17315 (RA876_17315) - 3567293..3568708 (-) 1416 WP_075585253.1 THUMP domain-containing protein -
  RA876_RS17320 (RA876_17320) rpoN/rpoN1 3568831..3570429 (-) 1599 WP_075585254.1 RNA polymerase factor sigma-54 Machinery gene
  RA876_RS17325 (RA876_17325) lptB 3570512..3571333 (-) 822 WP_083633758.1 LPS export ABC transporter ATP-binding protein -
  RA876_RS17330 (RA876_17330) lptA 3571330..3571968 (-) 639 WP_075585298.1 lipopolysaccharide transport periplasmic protein LptA -
  RA876_RS17335 (RA876_17335) - 3572070..3572714 (-) 645 WP_075585255.1 thiol:disulfide interchange protein DsbA/DsbL -
  RA876_RS17340 (RA876_17340) - 3572785..3573393 (-) 609 WP_083633761.1 SPOR domain-containing protein -
  RA876_RS17345 (RA876_17345) argS 3573427..3575124 (-) 1698 WP_075585257.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58400.06 Da        Isoelectric Point: 4.7305

>NTDB_id=214357 RA876_RS17320 WP_075585254.1 3568831..3570429(-) (rpoN/rpoN1) [Rhodoferax antarcticus strain DSMZ24876]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSSEVDQMLDDNPFLERKVEEAERESFGLEQLDTPVSASDREAESATY
SAADYASTTTAKTENDVENSGLSSDDGPSWEGDGSVSMGPDDSEWGSEAQAKGNNLSGDDAMDATELARNQESLQSFLHR
QALGLRLSLEDNAALRFLIESLNDDGYLEDPLEELAGGLAGGDDEEQLGQLVHHFTVALRLLQSLEPIGVGARGLAECLT
LQLQALLKLSDTQLDLDPDTIEVALAICRQPMELLARRDIKHLMPLCRASDAEVRAAITMIGHLEPKPGRRFVDVERNVV
VPDVLVIKVGSGAAVKFIVRLNPEVMPRLRVHDIYANALKGHKAGGSEAASALALQQRLQEARWFIKNIQQRFDTILRVS
TAIVERQKSFFIHGELAMRPLVLREIADELGLHESTISRVTTAKYIATPYGTFELKYFFGSGLGTESGGNASSTAVRALI
KQFVAAESPKKPLSDNQISDMLKEQGIECARRTVAKYREGLRIAPAYLRKEL

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=214357 RA876_RS17320 WP_075585254.1 3568831..3570429(-) (rpoN/rpoN1) [Rhodoferax antarcticus strain DSMZ24876]
ATGAAGCAAGGCCTGTCGCTACGCGTTTCGCAGCATCTGGCGCTCACGCCCCAGTTGCAGCAATCCATCCGGCTGCTGCA
GTTGTCGACGCTGGAGTTGTCTTCCGAAGTCGATCAGATGCTGGACGACAACCCGTTTTTAGAGCGCAAAGTGGAAGAAG
CTGAGCGCGAGTCGTTTGGCTTGGAGCAATTGGACACGCCTGTCAGCGCCTCCGACCGTGAGGCGGAGTCTGCTACTTAT
TCGGCAGCTGACTACGCAAGCACAACAACGGCTAAGACCGAAAATGACGTAGAAAATTCAGGCTTGTCCAGCGACGACGG
CCCCAGCTGGGAAGGCGATGGCAGCGTCAGCATGGGCCCCGATGACAGCGAATGGGGCAGCGAAGCACAGGCCAAAGGCA
ACAACCTCAGCGGTGACGACGCGATGGACGCCACCGAGCTGGCGCGCAACCAGGAGTCGCTGCAAAGCTTTTTGCACCGG
CAGGCGTTGGGCTTACGCCTAAGCTTGGAGGACAACGCTGCGCTGCGCTTCCTGATCGAGTCGCTCAATGACGACGGCTA
CCTGGAAGACCCGCTGGAAGAGCTGGCGGGCGGCCTTGCCGGGGGTGACGATGAGGAGCAACTCGGCCAATTGGTGCACC
ACTTCACCGTGGCGCTACGCCTGCTGCAGAGTCTGGAGCCCATCGGTGTGGGTGCGCGTGGCCTGGCCGAATGCCTCACG
CTGCAGCTGCAGGCGTTGCTGAAACTCTCCGACACCCAGCTTGACCTGGACCCTGACACCATCGAAGTGGCCTTGGCAAT
TTGCCGCCAGCCGATGGAATTGCTGGCGCGGCGTGACATCAAGCACCTGATGCCGCTGTGCCGCGCCAGTGACGCCGAAG
TGCGCGCCGCCATCACCATGATTGGCCACCTGGAGCCCAAACCCGGGCGGCGTTTTGTCGACGTGGAGCGCAACGTGGTG
GTGCCAGACGTGCTGGTGATCAAGGTCGGCAGCGGTGCGGCGGTCAAATTCATCGTGCGGCTGAACCCCGAAGTGATGCC
GCGCCTGCGTGTCCATGACATTTATGCCAACGCGCTCAAAGGCCATAAAGCCGGTGGCAGCGAAGCCGCAAGCGCCTTGG
CGCTGCAGCAACGGCTGCAAGAAGCGCGCTGGTTTATTAAAAACATTCAACAGCGTTTTGACACCATCCTGCGTGTCAGC
ACTGCGATTGTCGAGCGTCAAAAAAGCTTCTTCATCCACGGTGAACTGGCCATGCGCCCGCTGGTGCTGCGCGAGATTGC
TGACGAGCTGGGCCTGCACGAGTCCACCATCAGCCGCGTCACCACCGCTAAATACATAGCCACACCCTACGGCACCTTTG
AGCTGAAGTACTTTTTTGGCTCCGGGCTGGGCACCGAGTCGGGCGGCAACGCCTCCAGCACCGCGGTGCGCGCCCTCATC
AAGCAGTTTGTCGCCGCCGAGAGCCCGAAGAAACCGCTGTCTGACAACCAGATCTCCGACATGCTCAAAGAGCAGGGCAT
TGAATGCGCGCGGCGCACCGTGGCGAAATACCGTGAAGGGCTGCGCATCGCCCCGGCGTATCTGAGAAAGGAATTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-530)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(145-355)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.115

100

0.517

Multiple sequence alignment