Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RD110_RS05945 Genome accession   NZ_CP019236
Coordinates   1243545..1243955 (+) Length   136 a.a.
NCBI ID   WP_239467182.1    Uniprot ID   -
Organism   Rhodoferax koreense strain DCY-110     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238545..1248955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RD110_RS05925 (RD110_05925) - 1240086..1240745 (-) 660 WP_076197588.1 glycine zipper 2TM domain-containing protein -
  RD110_RS05930 (RD110_05930) hemL 1240887..1242200 (-) 1314 WP_076197590.1 glutamate-1-semialdehyde 2,1-aminomutase -
  RD110_RS05935 (RD110_05935) - 1242184..1243152 (-) 969 WP_076197592.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RD110_RS05940 (RD110_05940) - 1243268..1243441 (+) 174 WP_076197594.1 rubredoxin -
  RD110_RS05945 (RD110_05945) pilG 1243545..1243955 (+) 411 WP_239467182.1 PleD family two-component system response regulator Regulator
  RD110_RS05950 (RD110_05950) - 1243955..1244326 (+) 372 WP_076197598.1 PleD family two-component system response regulator -
  RD110_RS05955 (RD110_05955) - 1244333..1244857 (+) 525 WP_076197600.1 chemotaxis protein CheW -
  RD110_RS05960 (RD110_05960) - 1244895..1247171 (+) 2277 WP_076197602.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14961.24 Da        Isoelectric Point: 7.8530

>NTDB_id=214315 RD110_RS05945 WP_239467182.1 1243545..1243955(+) (pilG) [Rhodoferax koreense strain DCY-110]
MTTSLSTYRVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKINDHAPQLIFCDILMPKLDGYQTCAIIKRNPRFS
AIPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGATAPQALQGVA

Nucleotide


Download         Length: 411 bp        

>NTDB_id=214315 RD110_RS05945 WP_239467182.1 1243545..1243955(+) (pilG) [Rhodoferax koreense strain DCY-110]
GTGACGACATCCCTTTCGACCTACAGGGTGCTGGTGGTGGACGACAGCAACACCATCCGCCGCAGCGCCGAGATTTTCCT
GAAGCAGGGCGGCCACGAGGTGCTGCTGGCCGAAGACGGCTTCGATGCGCTGTCCAAGATCAACGACCATGCGCCGCAGC
TGATCTTCTGCGACATCCTGATGCCCAAGCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAATCCGCGGTTTTCC
GCGATCCCGGTGGTCATGCTGTCGTCCAAGGACGGCGTGTTCGACAAGGCGCGCGGGCGCATGGTCGGCTCGCAGGACTA
CCTCACCAAACCATTCACCAAAGACCAGTTGCTGCAGGCTGTGCAGCAGTTCGGCGCGACTGCCCCGCAGGCGCTGCAAG
GAGTTGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

56.911

90.441

0.515

Multiple sequence alignment