Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BVH75_RS24510 Genome accession   NZ_CP019230
Coordinates   4542790..4544139 (-) Length   449 a.a.
NCBI ID   WP_047387211.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain YGd22-03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4537790..4549139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH75_RS24475 (BVH75_24470) - 4537834..4538529 (-) 696 WP_000466510.1 hypothetical protein -
  BVH75_RS24480 (BVH75_24475) - 4538516..4539304 (-) 789 WP_087875947.1 hypothetical protein -
  BVH75_RS24485 (BVH75_24480) - 4539332..4539901 (-) 570 WP_001211058.1 hypothetical protein -
  BVH75_RS24490 (BVH75_24485) - 4540019..4540492 (-) 474 WP_000511548.1 hypothetical protein -
  BVH75_RS24495 (BVH75_24490) raiA 4540897..4541439 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  BVH75_RS24500 (BVH75_24495) cspC 4541762..4541959 (-) 198 WP_001990088.1 cold shock protein CspC -
  BVH75_RS24505 (BVH75_24500) - 4542086..4542790 (-) 705 WP_033685746.1 ComF family protein -
  BVH75_RS24510 (BVH75_24505) comFA 4542790..4544139 (-) 1350 WP_047387211.1 ATP-dependent helicase ComFA Machinery gene
  BVH75_RS24515 (BVH75_24510) - 4544267..4545694 (-) 1428 WP_100240233.1 C40 family peptidase -
  BVH75_RS24520 (BVH75_24515) - 4545843..4546157 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  BVH75_RS24530 (BVH75_24520) - 4546330..4547172 (-) 843 WP_002103834.1 DegV family protein -
  BVH75_RS24535 (BVH75_24525) - 4547409..4548044 (+) 636 WP_048568614.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51036.92 Da        Isoelectric Point: 9.9516

>NTDB_id=214298 BVH75_RS24510 WP_047387211.1 4542790..4544139(-) (comFA) [Bacillus thuringiensis strain YGd22-03]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVYAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=214298 BVH75_RS24510 WP_047387211.1 4542790..4544139(-) (comFA) [Bacillus thuringiensis strain YGd22-03]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTATATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAAGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCAAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503
  comFA Latilactobacillus sakei subsp. sakei 23K

41.191

89.755

0.37

Multiple sequence alignment