Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECs_0525 Genome accession   NC_002695
Coordinates   560301..560906 (+) Length   201 a.a.
NCBI ID   NP_308552.1    Uniprot ID   P0A7H8
Organism   Escherichia coli O157:H7 str. Sakai     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555301..565906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECs_0519 ybaM 556003..556167 (-) 165 NP_308546.1 hypothetical protein -
  ECs_0520 priC 556181..556708 (-) 528 NP_308547.1 primosomal replication protein PriC -
  ECs_0521 ybaN 556778..557155 (+) 378 NP_308548.1 inner membrane protein -
  ECs_0522 apt 557308..557859 (+) 552 NP_308549.1 adenine phosphoribosyltransferase -
  ECs_0523 dnaX 557988..559919 (+) 1932 NP_308550.1 DNA polymerase III/DNA elongation factor III tau and gamma subunits DnaX -
  ECs_0524 ybaB 559972..560301 (+) 330 NP_308551.1 hypothetical protein -
  ECs_0525 recR 560301..560906 (+) 606 NP_308552.1 recombination protein RecR Machinery gene
  ECs_0526 htpG 561016..562890 (+) 1875 NP_308553.1 heat shock protein Hsp90 -
  ECs_0527 adk 563011..563715 (+) 705 NP_308554.2 adenylate kinase -
  ECs_0528 hemH 563847..564809 (+) 963 NP_308555.1 ferrochelatase -
  ECs_0529 aes 564806..565765 (-) 960 NP_308556.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=21428 ECs_0525 NP_308552.1 560301..560906(+) (recR) [Escherichia coli O157:H7 str. Sakai]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=21428 ECs_0525 NP_308552.1 560301..560906(+) (recR) [Escherichia coli O157:H7 str. Sakai]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment