Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CUC42_RS00305 Genome accession   NZ_CP024801
Coordinates   50590..51036 (-) Length   148 a.a.
NCBI ID   WP_089455113.1    Uniprot ID   -
Organism   Escherichia coli strain AMA1167     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45590..56036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC42_RS00260 (CUC42_00260) setC 45733..46917 (-) 1185 WP_001172877.1 sugar efflux transporter -
  CUC42_RS00265 (CUC42_00265) rhuM 47347..47475 (-) 129 Protein_46 RhuM family protein -
  CUC42_RS00275 (CUC42_00275) - 47710..48555 (-) 846 WP_001274561.1 DUF4942 domain-containing protein -
  CUC42_RS00280 (CUC42_00280) - 48640..48837 (-) 198 WP_000772032.1 DUF957 domain-containing protein -
  CUC42_RS00285 (CUC42_00285) - 48857..49345 (-) 489 WP_000761716.1 DUF5983 family protein -
  CUC42_RS00290 (CUC42_00290) - 49342..49719 (-) 378 WP_001094437.1 TA system toxin CbtA family protein -
  CUC42_RS00295 (CUC42_00295) - 49766..50143 (-) 378 WP_001390338.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CUC42_RS00300 (CUC42_00300) - 50306..50527 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CUC42_RS00305 (CUC42_00305) radC 50590..51036 (-) 447 WP_089455113.1 RadC family protein Machinery gene
  CUC42_RS00310 (CUC42_00310) istB 51124..51870 (-) 747 WP_053906593.1 IS21-like element ISEc12 family helper ATPase IstB -
  CUC42_RS00315 (CUC42_00315) istA 51885..53426 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CUC42_RS00320 (CUC42_00320) - 53668..53838 (-) 171 Protein_56 antirestriction protein -
  CUC42_RS00325 (CUC42_00325) - 53840..54604 (-) 765 Protein_57 ESPR-type extended signal peptide-containing protein -
  CUC42_RS00330 (CUC42_00330) - 54976..55740 (-) 765 WP_162869019.1 GTPase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16510.91 Da        Isoelectric Point: 7.2517

>NTDB_id=214259 CUC42_RS00305 WP_089455113.1 50590..51036(-) (radC) [Escherichia coli strain AMA1167]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=214259 CUC42_RS00305 WP_089455113.1 50590..51036(-) (radC) [Escherichia coli strain AMA1167]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGTGAA
GTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
CAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(28-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

76.351

0.426