Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CUB99_RS07160 Genome accession   NZ_CP024717
Coordinates   1300612..1301088 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain LS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295612..1306088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB99_RS07110 (CUB99_07110) ecpE 1295838..1296548 (+) 711 WP_001295798.1 fimbrial chaperone EcpE -
  CUB99_RS07115 (CUB99_07115) ykgJ 1296855..1297184 (+) 330 WP_001295797.1 YkgJ family cysteine cluster protein -
  CUB99_RS07120 (CUB99_07120) - 1297196..1297362 (-) 167 Protein_1321 tail fiber assembly protein -
  CUB99_RS07125 (CUB99_07125) yagU 1297433..1298047 (-) 615 WP_001019923.1 YagU family protein -
  CUB99_RS07130 (CUB99_07130) - 1298262..1298447 (-) 186 WP_000146240.1 hypothetical protein -
  CUB99_RS28155 - 1298496..1298654 (+) 159 Protein_1324 integrase -
  CUB99_RS07140 (CUB99_07140) - 1298861..1299229 (-) 369 WP_001094398.1 TA system toxin CbtA family protein -
  CUB99_RS07145 (CUB99_07145) - 1299250..1299608 (-) 359 Protein_1326 type IV toxin-antitoxin system YeeU family antitoxin -
  CUB99_RS07150 (CUB99_07150) - 1299659..1300303 (-) 645 WP_000086755.1 hypothetical protein -
  CUB99_RS07155 (CUB99_07155) - 1300322..1300543 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CUB99_RS07160 (CUB99_07160) radC 1300612..1301088 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CUB99_RS07165 (CUB99_07165) - 1301104..1301589 (-) 486 WP_000214317.1 antirestriction protein -
  CUB99_RS07170 (CUB99_07170) - 1301680..1302498 (-) 819 WP_001234702.1 DUF932 domain-containing protein -
  CUB99_RS07185 (CUB99_07185) - 1302825..1305671 (-) 2847 WP_099996239.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=214099 CUB99_RS07160 WP_001186773.1 1300612..1301088(-) (radC) [Escherichia coli strain LS4]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214099 CUB99_RS07160 WP_001186773.1 1300612..1301088(-) (radC) [Escherichia coli strain LS4]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392