Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CUB84_RS21600 Genome accession   NZ_CP024659
Coordinates   4385944..4386612 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain RM9872-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4380944..4391612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB84_RS21570 (CUB84_23180) rfaQ 4381122..4382180 (-) 1059 WP_000360416.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CUB84_RS21575 (CUB84_23185) waaA 4382593..4383870 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CUB84_RS21580 (CUB84_23190) coaD 4383878..4384357 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CUB84_RS21585 (CUB84_23195) mutM 4384396..4385205 (-) 810 WP_001114545.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CUB84_RS21590 (CUB84_23200) rpmG 4385303..4385470 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CUB84_RS21595 (CUB84_23205) rpmB 4385491..4385727 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CUB84_RS21600 (CUB84_23210) radC 4385944..4386612 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CUB84_RS21605 (CUB84_23215) coaBC 4386784..4388004 (+) 1221 WP_000050121.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CUB84_RS21610 (CUB84_23220) dut 4387982..4388440 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CUB84_RS21615 (CUB84_23225) slmA 4388547..4389143 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CUB84_RS21620 (CUB84_23230) pyrE 4389180..4389821 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CUB84_RS21625 (CUB84_23235) rph 4389887..4390603 (-) 717 WP_001247093.1 ribonuclease PH -
  CUB84_RS21630 (CUB84_23245) yicC 4390730..4391593 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=214060 CUB84_RS21600 WP_001297375.1 4385944..4386612(-) (radC) [Escherichia coli strain RM9872-C1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=214060 CUB84_RS21600 WP_001297375.1 4385944..4386612(-) (radC) [Escherichia coli strain RM9872-C1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment