Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CUB84_RS13250 Genome accession   NZ_CP024659
Coordinates   2626661..2628088 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain RM9872-C1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2621661..2633088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB84_RS13210 (CUB84_14250) yeeW 2621845..2622039 (+) 195 WP_000988600.1 DUF5983 family protein -
  CUB84_RS13215 - 2622085..2622165 (+) 81 Protein_2627 hypothetical protein -
  CUB84_RS27445 (CUB84_14255) - 2622454..2622627 (-) 174 WP_032082634.1 transposase domain-containing protein -
  CUB84_RS13225 (CUB84_14260) - 2622654..2622836 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CUB84_RS13230 (CUB84_14265) tmaR 2622937..2623266 (-) 330 WP_000450409.1 DUF496 family protein -
  CUB84_RS13235 (CUB84_14270) yeeA 2623438..2624496 (-) 1059 WP_001200905.1 FUSC family protein -
  CUB84_RS13240 (CUB84_14275) sbmC 2624694..2625167 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CUB84_RS13245 (CUB84_14280) dacD 2625286..2626452 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CUB84_RS13250 (CUB84_14285) sbcB 2626661..2628088 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  CUB84_RS13255 (CUB84_14290) tsuB 2628131..2628358 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CUB84_RS13260 (CUB84_14295) tsuA 2628372..2629430 (-) 1059 WP_000492332.1 thiosulfate utilization transporter TsuA/YeeE -
  CUB84_RS13265 (CUB84_14300) plaP 2629609..2630967 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CUB84_RS13270 (CUB84_14305) yoeI 2630957..2631019 (-) 63 WP_010723108.1 membrane protein YoeI -
  CUB84_RS13275 (CUB84_14310) yeeY 2631234..2632163 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CUB84_RS13280 (CUB84_14315) yeeZ 2632209..2633033 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=214033 CUB84_RS13250 WP_000980539.1 2626661..2628088(+) (sbcB) [Escherichia coli strain RM9872-C1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=214033 CUB84_RS13250 WP_000980539.1 2626661..2628088(+) (sbcB) [Escherichia coli strain RM9872-C1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment