Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CUB84_RS13190 Genome accession   NZ_CP024659
Coordinates   2620184..2620660 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain RM9872-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2615184..2625660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB84_RS13160 (CUB84_14195) - 2615348..2616253 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  CUB84_RS13165 (CUB84_14200) - 2616250..2617320 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CUB84_RS13170 (CUB84_14205) - 2617456..2618139 (+) 684 WP_016239564.1 hypothetical protein -
  CUB84_RS13175 (CUB84_14210) - 2618155..2618565 (+) 411 WP_000846713.1 hypothetical protein -
  CUB84_RS13180 (CUB84_14220) - 2618786..2619607 (+) 822 WP_025380451.1 DUF932 domain-containing protein -
  CUB84_RS13185 (CUB84_14225) - 2619689..2620168 (+) 480 WP_000860076.1 antirestriction protein -
  CUB84_RS13190 (CUB84_14230) radC 2620184..2620660 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CUB84_RS13195 (CUB84_14235) yeeT 2620723..2620944 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CUB84_RS13200 (CUB84_14240) cbeA 2621018..2621386 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CUB84_RS13205 (CUB84_14245) cbtA 2621475..2621848 (+) 374 Protein_2625 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CUB84_RS13210 (CUB84_14250) yeeW 2621845..2622039 (+) 195 WP_000988600.1 DUF5983 family protein -
  CUB84_RS13215 - 2622085..2622165 (+) 81 Protein_2627 hypothetical protein -
  CUB84_RS27445 (CUB84_14255) - 2622454..2622627 (-) 174 WP_032082634.1 transposase domain-containing protein -
  CUB84_RS13225 (CUB84_14260) - 2622654..2622836 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CUB84_RS13230 (CUB84_14265) tmaR 2622937..2623266 (-) 330 WP_000450409.1 DUF496 family protein -
  CUB84_RS13235 (CUB84_14270) yeeA 2623438..2624496 (-) 1059 WP_001200905.1 FUSC family protein -
  CUB84_RS13240 (CUB84_14275) sbmC 2624694..2625167 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=214032 CUB84_RS13190 WP_001186773.1 2620184..2620660(+) (radC) [Escherichia coli strain RM9872-C1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=214032 CUB84_RS13190 WP_001186773.1 2620184..2620660(+) (radC) [Escherichia coli strain RM9872-C1]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392