Detailed information NTG0213958

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CDW44_RS14905
• Genome accession: NZ_CP024650
• Coordinates: 2929247..2930239 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BH100 substr. MG2014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2924247..2935239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDW44_RS14885 (CDW44_15200)	ygbM	2924878..2925654 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
CDW44_RS14890 (CDW44_15205)	ygbN	2925743..2927107 (+)	1365	WP_000104433.1	GntP family transporter	-
CDW44_RS14895 (CDW44_15210)	-	2927250..2928293 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
CDW44_RS14900 (CDW44_15215)	-	2928518..2929069 (+)	552	WP_001179442.1	flavodoxin family protein	-
CDW44_RS14905 (CDW44_15220)	rpoS	2929247..2930239 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CDW44_RS14910 (CDW44_15225)	nlpD	2930302..2931396 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CDW44_RS14915 (CDW44_15230)	pcm	2931581..2932207 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
CDW44_RS14920 (CDW44_15235)	surE	2932201..2932962 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CDW44_RS14925 (CDW44_15240)	truD	2932943..2933992 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
CDW44_RS14930 (CDW44_15245)	ispF	2933989..2934468 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CDW44_RS14935 (CDW44_15250)	ispD	2934468..2935178 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=213958 CDW44_RS14905 WP_000081550.1 2929247..2930239(-) (rpoS) [Escherichia coli strain BH100 substr. MG2014]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=213958 CDW44_RS14905 WP_000081550.1 2929247..2930239(-) (rpoS) [Escherichia coli strain BH100 substr. MG2014]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715