Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   BVH07_RS14110 Genome accession   NZ_CP019196
Coordinates   2774396..2775001 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Thompson strain ATCC BAA-1738     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2769396..2780001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH07_RS14095 (BVH07_14120) helD 2769613..2771667 (-) 2055 WP_017465794.1 DNA helicase IV -
  BVH07_RS14100 (BVH07_14125) - 2771791..2772237 (+) 447 WP_001261222.1 YccF domain-containing protein -
  BVH07_RS14105 (BVH07_14130) yccS 2772256..2774409 (+) 2154 WP_000950861.1 YccS family putative transporter -
  BVH07_RS14110 (BVH07_14135) sxy/tfoX 2774396..2775001 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  BVH07_RS14115 (BVH07_14140) sulA 2775218..2775727 (+) 510 WP_017465793.1 SOS-induced cell division inhibitor SulA -
  BVH07_RS14120 (BVH07_14145) ompA 2776085..2777137 (+) 1053 WP_001674965.1 porin OmpA -
  BVH07_RS14125 (BVH07_14150) matP 2777209..2777661 (-) 453 WP_017465792.1 macrodomain Ter protein MatP -
  BVH07_RS14130 (BVH07_14155) - 2777847..2779607 (+) 1761 WP_017465791.1 AAA family ATPase -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=213934 BVH07_RS14110 WP_001202375.1 2774396..2775001(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain ATCC BAA-1738]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=213934 BVH07_RS14110 WP_001202375.1 2774396..2775001(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Thompson strain ATCC BAA-1738]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751


Multiple sequence alignment