Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | CDW44_RS01800 | Genome accession | NZ_CP024650 |
| Coordinates | 366936..367412 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186199.1 | Uniprot ID | Q83W77 |
| Organism | Escherichia coli strain BH100 substr. MG2014 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 361936..372412
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDW44_RS01780 (CDW44_01880) | agn43 | 362077..365198 (+) | 3122 | Protein_328 | autotransporter adhesin Ag43 | - |
| CDW44_RS01790 (CDW44_01890) | - | 365525..366343 (+) | 819 | WP_001234709.1 | DUF932 domain-containing protein | - |
| CDW44_RS01795 (CDW44_01895) | - | 366435..366920 (+) | 486 | WP_000213723.1 | antirestriction protein | - |
| CDW44_RS01800 (CDW44_01900) | radC | 366936..367412 (+) | 477 | WP_001186199.1 | RadC family protein | Machinery gene |
| CDW44_RS01805 (CDW44_01905) | - | 367481..367702 (+) | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| CDW44_RS01810 (CDW44_01910) | cbeA | 367865..368233 (+) | 369 | WP_001278232.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| CDW44_RS01815 (CDW44_01915) | - | 368323..368700 (+) | 378 | WP_000854700.1 | TA system toxin CbtA family protein | - |
| CDW44_RS01820 (CDW44_01920) | - | 368697..369185 (+) | 489 | WP_000761726.1 | DUF5983 family protein | - |
| CDW44_RS01825 (CDW44_01925) | - | 369197..369394 (+) | 198 | WP_000839247.1 | DUF957 domain-containing protein | - |
| CDW44_RS01830 (CDW44_01930) | - | 369479..370333 (+) | 855 | WP_024174313.1 | DUF4942 domain-containing protein | - |
| CDW44_RS01835 (CDW44_01935) | - | 370426..371745 (-) | 1320 | WP_000144686.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17734.36 Da Isoelectric Point: 7.6152
>NTDB_id=213923 CDW44_RS01800 WP_001186199.1 366936..367412(+) (radC) [Escherichia coli strain BH100 substr. MG2014]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=213923 CDW44_RS01800 WP_001186199.1 366936..367412(+) (radC) [Escherichia coli strain BH100 substr. MG2014]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |