Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPZ93_RS27670 Genome accession   NZ_CP024630
Coordinates   5858334..5858843 (+) Length   169 a.a.
NCBI ID   WP_016487841.1    Uniprot ID   A0ABM9FB01
Organism   Pseudomonas aeruginosa strain PA59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5853334..5863843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ93_RS27645 (CPZ93_28300) - 5853593..5853940 (+) 348 WP_003095090.1 pentapeptide repeat-containing protein -
  CPZ93_RS27650 (CPZ93_28305) - 5854166..5854438 (+) 273 WP_003095094.1 TfoX/Sxy family protein -
  CPZ93_RS27655 (CPZ93_28310) cbpA 5854543..5855340 (+) 798 WP_003095096.1 cAMP-binding protein CbpA -
  CPZ93_RS27660 (CPZ93_28315) - 5855722..5856921 (+) 1200 WP_014603550.1 site-specific integrase -
  CPZ93_RS27665 (CPZ93_28320) - 5856918..5857982 (+) 1065 WP_016487843.1 YhcG family protein -
  CPZ93_RS27670 (CPZ93_28325) radC 5858334..5858843 (+) 510 WP_016487841.1 DNA repair protein RadC Machinery gene
  CPZ93_RS27675 (CPZ93_28330) - 5858910..5861213 (-) 2304 WP_022652190.1 AAA family ATPase -
  CPZ93_RS27680 (CPZ93_28335) - 5861759..5862586 (+) 828 WP_003092327.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18781.39 Da        Isoelectric Point: 6.4951

>NTDB_id=213894 CPZ93_RS27670 WP_016487841.1 5858334..5858843(+) (radC) [Pseudomonas aeruginosa strain PA59]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMQRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=213894 CPZ93_RS27670 WP_016487841.1 5858334..5858843(+) (radC) [Pseudomonas aeruginosa strain PA59]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCAGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373