Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CPZ93_RS13390 Genome accession   NZ_CP024630
Coordinates   2793383..2793877 (-) Length   164 a.a.
NCBI ID   WP_003090203.1    Uniprot ID   I3TV57
Organism   Pseudomonas aeruginosa strain PA59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788383..2798877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ93_RS13365 (CPZ93_13665) - 2788531..2790051 (-) 1521 WP_003090214.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  CPZ93_RS13370 (CPZ93_13670) - 2790065..2790424 (-) 360 WP_003090212.1 hypothetical protein -
  CPZ93_RS13375 (CPZ93_13675) - 2790421..2791815 (-) 1395 WP_003109770.1 integrating conjugative element protein -
  CPZ93_RS13380 (CPZ93_13680) - 2791825..2792775 (-) 951 WP_003090208.1 TIGR03756 family integrating conjugative element protein -
  CPZ93_RS13385 (CPZ93_13685) - 2792772..2793218 (-) 447 WP_003109772.1 TIGR03757 family integrating conjugative element protein -
  CPZ93_RS13390 (CPZ93_13690) radC 2793383..2793877 (-) 495 WP_003090203.1 JAB domain-containing protein Machinery gene
  CPZ93_RS13395 (CPZ93_13695) - 2794053..2794820 (-) 768 WP_003090202.1 thioredoxin domain-containing protein -
  CPZ93_RS13400 (CPZ93_13700) - 2794845..2797736 (-) 2892 WP_003105079.1 conjugative transfer ATPase -
  CPZ93_RS13405 (CPZ93_13705) - 2797736..2798185 (-) 450 WP_003109775.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17951.80 Da        Isoelectric Point: 5.9780

>NTDB_id=213857 CPZ93_RS13390 WP_003090203.1 2793383..2793877(-) (radC) [Pseudomonas aeruginosa strain PA59]
MSFVVNDSCLESLSAIAAQHEDWIIQQAIALLEKRVFKAGAKLLDPTAVRDYLRVKLVAEPNEIFAAVFLDSMHQVLAYE
PLFRGTINSTSVYPRVVVQRVLELKAAAVVFAHQHPSGISEPSSADRMLTQQLQAALALIDVRVLDHIIVGQGAPFSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=213857 CPZ93_RS13390 WP_003090203.1 2793383..2793877(-) (radC) [Pseudomonas aeruginosa strain PA59]
ATGTCTTTCGTCGTCAATGACTCCTGCCTGGAGTCGCTTTCCGCCATCGCTGCCCAACACGAGGACTGGATCATCCAGCA
AGCCATTGCACTGCTGGAGAAGCGGGTTTTCAAAGCGGGTGCGAAACTCCTCGACCCCACGGCCGTGCGCGACTACCTGC
GCGTGAAGCTGGTCGCCGAGCCCAATGAGATATTCGCCGCGGTGTTCCTGGACAGCATGCACCAGGTGCTGGCCTACGAG
CCGTTGTTCAGGGGCACGATCAACTCGACTTCGGTCTATCCGCGTGTCGTCGTGCAGCGTGTGCTGGAGTTGAAGGCCGC
CGCGGTGGTCTTCGCGCACCAGCACCCCTCGGGCATTTCCGAGCCGTCGAGCGCGGATCGCATGCTGACCCAGCAACTGC
AGGCCGCGCTGGCGCTCATCGATGTGCGGGTACTGGACCACATCATCGTCGGCCAGGGTGCCCCGTTCTCCTTTGCGGAG
TCCGGCCTGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3TV57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.466

89.024

0.378

Multiple sequence alignment