Detailed information NTG0213835

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CPZ93_RS07160
• Genome accession: NZ_CP024630
• Coordinates: 1508221..1509225 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA59
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1503221..1514225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPZ93_RS07130 (CPZ93_07290)	fghA	1503313..1504164 (+)	852	WP_003122149.1	S-formylglutathione hydrolase	-
CPZ93_RS07135 (CPZ93_07295)	ispF	1504235..1504708 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CPZ93_RS07140 (CPZ93_07300)	truD	1504705..1505772 (+)	1068	WP_153274353.1	tRNA pseudouridine(13) synthase TruD	-
CPZ93_RS07145 (CPZ93_07305)	surE	1505760..1506509 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CPZ93_RS07150 (CPZ93_07310)	-	1506542..1507177 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CPZ93_RS07155 (CPZ93_07315)	-	1507223..1508116 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
CPZ93_RS07160 (CPZ93_07320)	rpoS	1508221..1509225 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CPZ93_RS07165 (CPZ93_07325)	fdxA	1509651..1509974 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CPZ93_RS07170 (CPZ93_07330)	mutS	1510041..1512608 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
CPZ93_RS07175 (CPZ93_07340)	-	1512734..1513741 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=213835 CPZ93_RS07160 WP_003113871.1 1508221..1509225(+) (rpoS) [Pseudomonas aeruginosa strain PA59]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=213835 CPZ93_RS07160 WP_003113871.1 1508221..1509225(+) (rpoS) [Pseudomonas aeruginosa strain PA59]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653