Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEM9284_RS14065 Genome accession   NZ_CP019184
Coordinates   2753845..2754450 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748845..2759450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEM9284_RS14050 (SEEM9284_014050) helD 2749062..2751116 (-) 2055 WP_065348345.1 DNA helicase IV -
  SEEM9284_RS14055 (SEEM9284_014055) - 2751240..2751686 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEM9284_RS14060 (SEEM9284_014060) yccS 2751705..2753858 (+) 2154 WP_023215050.1 YccS family putative transporter -
  SEEM9284_RS14065 (SEEM9284_014065) sxy/tfoX 2753845..2754450 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEM9284_RS14070 (SEEM9284_014070) sulA 2754667..2755176 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  SEEM9284_RS14075 (SEEM9284_014075) ompA 2755533..2756585 (+) 1053 WP_001562588.1 porin OmpA -
  SEEM9284_RS14080 (SEEM9284_014080) matP 2756657..2757109 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEM9284_RS14085 (SEEM9284_014085) - 2757295..2759055 (+) 1761 WP_000156462.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=213826 SEEM9284_RS14065 WP_001202375.1 2753845..2754450(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=213826 SEEM9284_RS14065 WP_001202375.1 2753845..2754450(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Minnesota str. ATCC 49284]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment