Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEM1958_RS15290 Genome accession   NZ_CP019183
Coordinates   2976875..2977480 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2971875..2982480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEM1958_RS15275 (SEEM1958_015280) helD 2972092..2974146 (-) 2055 WP_023218312.1 DNA helicase IV -
  SEEM1958_RS15280 (SEEM1958_015285) - 2974270..2974716 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEM1958_RS15285 (SEEM1958_015290) yccS 2974735..2976888 (+) 2154 WP_000950867.1 YccS family putative transporter -
  SEEM1958_RS15290 (SEEM1958_015295) sxy/tfoX 2976875..2977480 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEM1958_RS15295 (SEEM1958_015300) sulA 2977697..2978206 (+) 510 WP_001726974.1 SOS-induced cell division inhibitor SulA -
  SEEM1958_RS15300 (SEEM1958_015305) ompA 2978563..2979615 (+) 1053 WP_023193195.1 porin OmpA -
  SEEM1958_RS15305 (SEEM1958_015310) matP 2979687..2980139 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEM1958_RS15310 (SEEM1958_015315) - 2980325..2982085 (+) 1761 WP_076031800.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=213803 SEEM1958_RS15290 WP_001202375.1 2976875..2977480(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=213803 SEEM1958_RS15290 WP_001202375.1 2976875..2977480(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCTAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment