Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR916_RS27410 Genome accession   NZ_CP024618
Coordinates   4802152..4802820 (-) Length   222 a.a.
NCBI ID   WP_096851616.1    Uniprot ID   -
Organism   Escherichia coli strain SMN152SH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4797152..4807820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR916_RS27380 (CR916_27310) rfaQ 4797330..4798388 (-) 1059 WP_096851615.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CR916_RS27385 (CR916_27315) waaA 4798801..4800078 (+) 1278 WP_062882544.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CR916_RS27390 (CR916_27320) coaD 4800086..4800565 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CR916_RS27395 (CR916_27325) mutM 4800604..4801413 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CR916_RS27400 (CR916_27330) rpmG 4801511..4801678 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CR916_RS27405 (CR916_27335) rpmB 4801699..4801935 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CR916_RS27410 (CR916_27340) radC 4802152..4802820 (-) 669 WP_096851616.1 DNA repair protein RadC Machinery gene
  CR916_RS27415 (CR916_27345) coaBC 4802992..4804212 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CR916_RS27420 (CR916_27350) dut 4804190..4804648 (+) 459 WP_062882545.1 dUTP diphosphatase -
  CR916_RS27425 (CR916_27355) slmA 4804755..4805351 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CR916_RS27430 (CR916_27360) pyrE 4805388..4806029 (-) 642 WP_000806182.1 orotate phosphoribosyltransferase -
  CR916_RS27435 (CR916_27365) rph 4806095..4806811 (-) 717 WP_001247089.1 ribonuclease PH -
  CR916_RS27445 (CR916_27375) yicC 4806938..4807801 (+) 864 WP_096851617.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25273.32 Da        Isoelectric Point: 7.9748

>NTDB_id=213799 CR916_RS27410 WP_096851616.1 4802152..4802820(-) (radC) [Escherichia coli strain SMN152SH1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTQAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=213799 CR916_RS27410 WP_096851616.1 4802152..4802820(-) (radC) [Escherichia coli strain SMN152SH1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCAGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGGGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491