Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR916_RS08775 Genome accession   NZ_CP024618
Coordinates   1450834..1451310 (+) Length   158 a.a.
NCBI ID   WP_062882313.1    Uniprot ID   -
Organism   Escherichia coli strain SMN152SH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445834..1456310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR916_RS08745 (CR916_08750) - 1447113..1448018 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  CR916_RS08750 (CR916_08755) - 1448015..1449084 (+) 1070 Protein_1457 patatin-like phospholipase family protein -
  CR916_RS08765 (CR916_08770) - 1449424..1450242 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  CR916_RS08770 (CR916_08775) - 1450333..1450818 (+) 486 WP_000214398.1 antirestriction protein -
  CR916_RS08775 (CR916_08780) radC 1450834..1451310 (+) 477 WP_062882313.1 RadC family protein Machinery gene
  CR916_RS08780 (CR916_08785) yeeT 1451373..1451594 (+) 222 WP_001220314.1 DUF987 domain-containing protein -
  CR916_RS08785 (CR916_08790) - 1451757..1452131 (+) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR916_RS08790 (CR916_08795) - 1452178..1452552 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  CR916_RS08795 (CR916_08800) - 1452549..1453040 (+) 492 WP_000976857.1 DUF5983 family protein -
  CR916_RS08800 (CR916_08805) - 1453052..1453249 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  CR916_RS08805 (CR916_08810) - 1453334..1454176 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  CR916_RS08815 (CR916_08820) infA 1454667..1454885 (-) 219 WP_001040187.1 translation initiation factor IF-1 -
  CR916_RS08820 (CR916_08830) aat 1455170..1455874 (-) 705 WP_062882312.1 leucyl/phenylalanyl-tRNA--protein transferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17654.23 Da        Isoelectric Point: 6.7739

>NTDB_id=213758 CR916_RS08775 WP_062882313.1 1450834..1451310(+) (radC) [Escherichia coli strain SMN152SH1]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=213758 CR916_RS08775 WP_062882313.1 1450834..1451310(+) (radC) [Escherichia coli strain SMN152SH1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386