Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEA1960_RS14925 Genome accession   NZ_CP019177
Coordinates   2902040..2902645 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897040..2907645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEA1960_RS14910 (SEEA1960_014925) helD 2897257..2899311 (-) 2055 WP_023241546.1 DNA helicase IV -
  SEEA1960_RS14915 (SEEA1960_014930) - 2899435..2899881 (+) 447 WP_001261222.1 YccF domain-containing protein -
  SEEA1960_RS14920 (SEEA1960_014935) yccS 2899900..2902053 (+) 2154 WP_023241545.1 YccS family putative transporter -
  SEEA1960_RS14925 (SEEA1960_014940) sxy/tfoX 2902040..2902645 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEA1960_RS14930 (SEEA1960_014945) sulA 2902862..2903371 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  SEEA1960_RS14935 (SEEA1960_014950) ompA 2903728..2904780 (+) 1053 WP_001670727.1 porin OmpA -
  SEEA1960_RS14940 (SEEA1960_014955) matP 2904852..2905304 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEA1960_RS14945 (SEEA1960_014960) - 2905490..2907250 (+) 1761 WP_023241544.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=213714 SEEA1960_RS14925 WP_001202375.1 2902040..2902645(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=213714 SEEA1960_RS14925 WP_001202375.1 2902040..2902645(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment